ABOUT THIS RECORDspecies: Ceratitis capitata
miRNA family: mir-450
source: miRNEST
Taxonomy by NCBI:
Ceratitis capitata Ceratitis Ceratitis Ceratitidini Dacinae Tephritidae Tephritoidea Acalyptratae Schizophora Cyclorrhapha Eremoneura Muscomorpha Brachycera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTTGCGATGTGTTGCGAATT miRNA* ATTGCATTGATAATAGTAAAATT mismatches: 4 bulges: 2 |
pre-miRNA
AATTATCACGTTACTTTTACAAATTGCATTGATAATAGTAAAATTTAAGACAATAATGGCTCATGCCGTACATTTGGATGATGAGGAAATAGCTCTATTT
CAAAAACGCGGTACATCTGTTGCACATTGTCCGGCGTCAAATACGATGCTATCTTCTGGTTTTTGCGATGTGTTGCGAATTATAAAACAAGGCGTGAAAG
dot-bracket secondary structure
.....(((((((..(((((.((.(((((.((...((.((((((.((((((..((((((((.((((((((...((((((....(((.......)))...))
))))...))))))....))..)).))))))..((((((......)))))).))))..)).)))))).)).)).))))).)).)))))...)))))))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AATTATCACGTTACTTTTACAAATTGCATTGATAATAGTAAAATTTAAGACAATAATGGCTCATGCCGTACATTTGGATGATGAGGAAATAGCTCTATTT
CAAAAACGCGGTACATCTGTTGCACATTGTCCGGCGTCAAATACGATGCTATCTTCTGGTTTTTGCGATGTGTTGCGAATTATAAAACAAGGCGTGAAAG
dot-bracket secondary structure
.....(((((((..(((((.((.(((((.((...((.((((((.((((((..((((((((.((((((((...((((((....(((.......)))...))
))))...))))))....))..)).))))))..((((((......)))))).))))..)).)))))).)).)).))))).)).)))))...)))))))...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q5RAV9|GUAD_PONAB: 0.0000000005 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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