miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Oryzias latipes, Gasterosteus aculeatus, Oreochromis niloticus, Fundulus heteroclitus, Sparus aurata, Dicentrarchus labrax, Dissostichus mawsoni, Anoplopoma fimbria, Takifugu rubripes, Sebastes caurinus, Perca flavescens, Paralabidochromis chilotes, Hippoglossus hippoglossus, Poecilia reticulata, Paralichthys olivaceus, Psetta maxima, Lates calcarifer, Sebastes rastrelliger, Solea senegalensis, Thunnus thynnus, Cynoglossus semilaevis

ABOUT THIS RECORD

ID: MNEST009575
species: Hippoglossus hippoglossus
miRNA family: mir-297
source: miRNEST

Taxonomy by NCBI:
Hippoglossus hippoglossus Hippoglossus Pleuronectinae Pleuronectidae Pleuronectoidei Pleuronectiformes Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
ATGTATGTGTGTATGTACATT

miRNA*
TGTTCATATATAACATATATGC

mismatches: 1
bulges: 1

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pre-miRNA
GAGGCAGGATTGGGTGCGTAAATGTATGTGTGTATGTACATTCATACAGTGAGACATCAAGGTCTGCGAGCACGTTCCCAATGGAATGAATGAGACAGTG
GTTTCAGAGTTGTTCGGATCCCAATGTTCATATATAACATATATGCGTATCTATTGTCTTGATG

dot-bracket secondary structure
(((((((...(((((((((..(((((((((((((((.(((((((.((..(((....)))..)).))((((((((((((....))))))..((((((....
))))))....))))))......))))).))))))).))))))))))))))))))))))))....

SIMILARITIES

miRBase no hits

PMRD no hits

microPC no hits

UniProt no hits

RFAM no hits

most similar mature miRNAs

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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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