miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Sus scrofa, Bos taurus, Rattus norvegicus, Canis lupus familiaris, Ovis aries, Macaca fascicularis, Trichosurus vulpecula, Papio anubis, Homo sapiens, Peromyscus maniculatus bairdii, Pongo abelii, Ursus americanus, Equus caballus, Oryctolagus cuniculus, Macaca nemestrina, Cavia porcellus, Bos indicus, Bos sp., Macropus eugenii, Peromyscus polionotus subgriseus, Capra hircus, Pan troglodytes verus, Macaca mulatta



ABOUT THIS RECORD

ID: MNEST009610
species: Cavia porcellus
miRNA family: miR-3195
source: miRNEST

Taxonomy by NCBI:
Cavia porcellus Cavia Caviidae Hystricognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CGCGCCGGGTCCGGGTCTTCC

miRNA*
 AAGACCCACTCCCCGGCGCCGCT

mismatches: 3
bulges: 2
View larger
pre-miRNA
 TACGGAAGACCCACTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCCTTCTGATCGATGCCCAGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGGCG
CGCCGGGTCCGGGTCTTCCCGGAGTCGG

dot-bracket secondary structure
...(((((((((....((((((((.(((....(((((((.....((.((.....)).(((..(((((....))).))..))).))....)))))))))))
)))))))...))))))))).........


SIMILARITIES
miRBase mmu-mir-5105: 9e-33

PMRD no hits

microPC no hits		UniProt no hits

RFAM SSU_rRNA_eukarya: 4e-60		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




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