miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Rattus norvegicus, Macaca fascicularis, Papio anubis, Homo sapiens, Peromyscus maniculatus bairdii, Pongo abelii, Oryctolagus cuniculus, Macaca nemestrina, Cavia porcellus, Peromyscus polionotus subgriseus, Pan troglodytes verus, Macaca mulatta



ABOUT THIS RECORD

ID: MNEST009613
species: Cavia porcellus
miRNA family: miR-3195
source: miRNEST

Taxonomy by NCBI:
Cavia porcellus Cavia Caviidae Hystricognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CGCGCCGGGTCCGGGTCTTCC

miRNA*
 AAGACCCACTCCCCGGCGCCGCT

mismatches: 3
bulges: 2
View larger
pre-miRNA
 GGCGTACGGAAGACCCACTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCAGCCCGTGGACGGAGTGAGGCCGGTAGCGGCCCCA
CGGCGCGCCGGGTCCGGGTCTTCCCGGAGT

dot-bracket secondary structure
.......(((((((((....((((((((.((.(((((((((((((..(((.(((...((.(((...))))).))).))).)).))))........)))))
))))))))))))...)))))))))......


SIMILARITIES
miRBase mmu-mir-5105: 9e-33

PMRD no hits

microPC no hits		UniProt no hits

RFAM SSU_rRNA_eukarya: 1e-56		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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