ABOUT THIS RECORDspecies: Poecilia reticulata
miRNA family: miR-2444
source: miRNEST
Taxonomy by NCBI:
Poecilia reticulata Poecilia Poeciliinae Poeciliidae Cyprinodontoidei Cyprinodontiformes Atherinomorpha Smegmamorpha Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGTGTTTTGTTTTGTTTTT miRNA* AAAAAAAAAAAAAAAAAAA mismatches: 4 bulges: 2 |
pre-miRNA
ATAATACTTGCTTTTTTTATTTTTGTGTTTTGTTTTGTTTTTGTTTGTTTTTTTTACCATCGCAGTTTGTAACTACTTTATATTGATTGTGTTTCATTTG
CCAAAAGTGAGACCCTGGTAATAGTGTAACTTTCTGTGTTATTAGGACTGGTGCCTTATGAGGGATAAGAAATTGAATTTTAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
dot-bracket secondary structure
...........(((((((.(((((...((((.((((.((((.(((((..(((((((((..(((((...((.((.......(((((.....(((((((((.
....))))))))).....)))))..)).))...)))))((((.(((.......))).)))).)).))))))).)))))...)))).)))).)))).))))
).)))))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATAATACTTGCTTTTTTTATTTTTGTGTTTTGTTTTGTTTTTGTTTGTTTTTTTTACCATCGCAGTTTGTAACTACTTTATATTGATTGTGTTTCATTTG
CCAAAAGTGAGACCCTGGTAATAGTGTAACTTTCTGTGTTATTAGGACTGGTGCCTTATGAGGGATAAGAAATTGAATTTTAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
dot-bracket secondary structure
...........(((((((.(((((...((((.((((.((((.(((((..(((((((((..(((((...((.((.......(((((.....(((((((((.
....))))))))).....)))))..)).))...)))))((((.(((.......))).)))).)).))))))).)))))...)))).)))).)))).))))
).)))))))...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
