ABOUT THIS RECORDspecies: Caligus clemensi
miRNA family: miR-3552
source: miRNEST
Taxonomy by NCBI:
Caligus clemensi Caligus Caligidae Siphonostomatoida Podoplea Neocopepoda Copepoda Maxillopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGATGCAGTCCCACTTCCCG miRNA* GGAAACAGGACTGCAACTAGG mismatches: 5 bulges: 0 |
pre-miRNA
CGAGGAGGCAGAGGATGCAGTCCCACTTCCCGCGGGTAGCTTGGTGTAGATGGTCGCCCGCCCTAAGGGATCTATGAGGGCTTCGGATCGGAGGTGGCTG
TAGAACTGATAAATGTTTTTCCAAAGGTAGATCCAGTATCCGAGAACCAGTCCAGCAAGCACGGGAAACAGGACTGCAACTAGGACGTCCAC
dot-bracket secondary structure
...(((......((.((((((((...((((((......(((((.((....((((.((((.(((...)))........)))).((((((.(((....(((.
.(((((........)))))......)))...)))...))))))..))))...)).))))).))))))...)))))))).))......)))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CGAGGAGGCAGAGGATGCAGTCCCACTTCCCGCGGGTAGCTTGGTGTAGATGGTCGCCCGCCCTAAGGGATCTATGAGGGCTTCGGATCGGAGGTGGCTG
TAGAACTGATAAATGTTTTTCCAAAGGTAGATCCAGTATCCGAGAACCAGTCCAGCAAGCACGGGAAACAGGACTGCAACTAGGACGTCCAC
dot-bracket secondary structure
...(((......((.((((((((...((((((......(((((.((....((((.((((.(((...)))........)))).((((((.(((....(((.
.(((((........)))))......)))...)))...))))))..))))...)).))))).))))))...)))))))).))......)))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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