miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Mus musculus
,
Sus scrofa
,
Bos taurus
,
Rattus norvegicus
,
Gallus gallus
,
Canis lupus familiaris
,
Ovis aries
,
Macaca fascicularis
,
Anolis carolinensis
,
Trichosurus vulpecula
,
Papio anubis
,
Homo sapiens
,
Taeniopygia guttata
,
Peromyscus maniculatus bairdii
,
Pongo abelii
,
Ursus americanus
,
Equus caballus
,
Oryctolagus cuniculus
,
Macaca nemestrina
,
Cavia porcellus
,
Bos indicus
,
Meleagris gallopavo
,
Lonchura striata domestica
,
Bos sp.
,
Macropus eugenii
,
Peromyscus polionotus subgriseus
,
Capra hircus
,
Pan troglodytes verus
,
Macaca mulatta
ABOUT THIS RECORD
ID:
MNEST009772
species:
Peromyscus polionotus subgriseus
miRNA family:
mir-138
source:
miRNEST
Taxonomy by NCBI:
Peromyscus polionotus subgriseus
Peromyscus polionotus
Peromyscus
Neotominae
Cricetidae
Muroidea
Sciurognathi
Rodentia
Glires
Euarchontoglires
Eutheria
Theria
Mammalia
Amniota
Tetrapoda
Sarcopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGCTGGTGTTGTGAAGTATTG
miRNA*
AAGCTTTATTTATACCCCTCC
mismatches:
3
bulges:
2
View larger
pre-miRNA
TTTCCACTGAG
AGCTGGTGTTGTGAAGTATTG
TGTGGCAGTGTTACCTGTGCCCCATTCCCAAAATCTGTGCACCA
AAGCTTTATTTATACCCCTCC
AGT
AACTG
dot-bracket secondary structure
.....((((.(
((..(((((.(((((((.(((
.(((((((........(((...))).........)))).)))))
).)))))))..))))).))))
)))
.....
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record