miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST000979
species: Hordeum vulgare
miRNA family: MIR1439
source: miRNEST

Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTTGGAACGGAGGGAGTATA

miRNA*
 TACTCCCTCTGTCCCAAAATA

mismatches: 1
bulges: 0
View larger
pre-miRNA
 TATAAAGATATACTCCCTCTGTCCCAAAATAAGTGACGCAAATTTAGTATTAAGTTAGTACAAATTTTATAGTAAAGCAGCGACACTTATTTTGGAACGG
AGGGAGTATATAGCAAT

dot-bracket secondary structure
.......(((((((((((((((.((((((((((((.(((...((((.(((.(((((......))))).))).))))...))).)))))))))))).))))
)))))))))))......


SIMILARITIES
miRBase osa-MIR1862d: 0.00002

PMRD hpr-miR1120: 0.0000000004

microPC miR1439: 0.00000002		UniProt no hits

RFAM MIR1122: 1e-31		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record




Liczniki na strone;