ABOUT THIS RECORDspecies: Gammarus pulex
miRNA family: mir-646
source: miRNEST
Taxonomy by NCBI:
Gammarus pulex Gammarus Gammaridae Gammaroidea Gammaridea Amphipoda Peracarida Eumalacostraca Malacostraca Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGCCGCTGCCCCTGAGGCAC miRNA* GCCTCAAGGGTAGCGCAAAC mismatches: 5 bulges: 1 |
pre-miRNA
CCGCCCTGACAAAGCCGCTGCCCCTGAGGCACCTCAGGCACCTCAGTTCAACGCGGAGTCCGTCCGGTCCGTGCTGAAAGCTCTGCCCGCCATCACCGAC
AGCCTCAAGGGTAGCGCAAACTCCGGTGA
dot-bracket secondary structure
.((((..((....((.(((((((.((((((......((((......((((.((((((..((....)))))))).)))).....)))).............
.)))))).)))))))))....)).)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCGCCCTGACAAAGCCGCTGCCCCTGAGGCACCTCAGGCACCTCAGTTCAACGCGGAGTCCGTCCGGTCCGTGCTGAAAGCTCTGCCCGCCATCACCGAC
AGCCTCAAGGGTAGCGCAAACTCCGGTGA
dot-bracket secondary structure
.((((..((....((.(((((((.((((((......((((......((((.((((((..((....)))))))).)))).....)))).............
.)))))).)))))))))....)).)))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
