miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Litopenaeus vannamei, Lepeophtheirus salmonis, Daphnia pulex, Petrolisthes cinctipes, Penaeus monodon, Artemia franciscana, Caligus rogercresseyi, Homarus americanus, Eriocheir sinensis, Carcinus maenas, Lernaeocera branchialis, Caligus clemensi, Daphnia magna, Gammarus pulex, Calanus finmarchicus, Callinectes sapidus, Fenneropenaeus chinensis



ABOUT THIS RECORD

ID: MNEST009808
species: Gammarus pulex
miRNA family: mir-646
source: miRNEST

Taxonomy by NCBI:
Gammarus pulex Gammarus Gammaridae Gammaroidea Gammaridea Amphipoda Peracarida Eumalacostraca Malacostraca Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AAGCCGCTGCCCCTGAGGCAC

miRNA*
 GCCTCAAGGGTAGCGCAAAC

mismatches: 5
bulges: 1
View larger
pre-miRNA
 CCGCCCTGACAAAGCCGCTGCCCCTGAGGCACCTCAGGCACCTCAGTTCAACGCGGAGTCCGTCCGGTCCGTGCTGAAAGCTCTGCCCGCCATCACCGAC
AGCCTCAAGGGTAGCGCAAACTCCGGTGA

dot-bracket secondary structure
.((((..((....((.(((((((.((((((......((((......((((.((((((..((....)))))))).)))).....)))).............
.)))))).)))))))))....)).)))).


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




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