miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Litopenaeus vannamei, Petrolisthes cinctipes, Penaeus monodon, Homarus americanus, Eriocheir sinensis, Carcinus maenas, Gammarus pulex, Callinectes sapidus, Fenneropenaeus chinensis



ABOUT THIS RECORD

ID: MNEST009808
species: Gammarus pulex
miRNA family: mir-646
source: miRNEST

Taxonomy by NCBI:
Gammarus pulex Gammarus Gammaridae Gammaroidea Gammaridea Amphipoda Peracarida Eumalacostraca Malacostraca Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AAGCCGCTGCCCCTGAGGCAC

miRNA*
 GCCTCAAGGGTAGCGCAAAC

mismatches: 5
bulges: 1
View larger
pre-miRNA
 CCGCCCTGACAAAGCCGCTGCCCCTGAGGCACCTCAGGCACCTCAGTTCAACGCGGAGTCCGTCCGGTCCGTGCTGAAAGCTCTGCCCGCCATCACCGAC
AGCCTCAAGGGTAGCGCAAACTCCGGTGA

dot-bracket secondary structure
.((((..((....((.(((((((.((((((......((((......((((.((((((..((....)))))))).)))).....)))).............
.)))))).)))))))))....)).)))).


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




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