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Species belonging to selected taxon:
Gammarus pulex
ABOUT THIS RECORD
ID:
MNEST009808
species:
Gammarus pulex
miRNA family:
mir-646
source:
miRNEST
Taxonomy by NCBI:
Gammarus pulex
Gammarus
Gammaridae
Gammaroidea
Gammaridea
Amphipoda
Peracarida
Eumalacostraca
Malacostraca
Crustacea
Pancrustacea
Mandibulata
Arthropoda
Panarthropoda
Protostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AAGCCGCTGCCCCTGAGGCAC
miRNA*
GCCTCAAGGGTAGCGCAAAC
mismatches:
5
bulges:
1
View larger
pre-miRNA
CCGCCCTGACA
AAGCCGCTGCCCCTGAGGCAC
CTCAGGCACCTCAGTTCAACGCGGAGTCCGTCCGGTCCGTGCTGAAAGCTCTGCCCGCCATCACCGAC
A
GCCTCAAGGGTAGCGCAAAC
TCCGGTGA
dot-bracket secondary structure
.((((..((..
..((.(((((((.((((((..
....((((......((((.((((((..((....)))))))).)))).....)))).............
.
)))))).)))))))))....
)).)))).
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record