miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Sus scrofa, Bos taurus, Rattus norvegicus, Xenopus laevis, Gallus gallus, Canis lupus familiaris, Ovis aries, Macaca fascicularis, Anolis carolinensis, Trichosurus vulpecula, Papio anubis, Homo sapiens, Taeniopygia guttata, Peromyscus maniculatus bairdii, Pongo abelii, Ursus americanus, Equus caballus, Oryctolagus cuniculus, Macaca nemestrina, Rana catesbeiana, Cynops pyrrhogaster, Ambystoma tigrinum tigrinum, Cavia porcellus, Bos indicus, Meleagris gallopavo, Lonchura striata domestica, Bos sp., Macropus eugenii, Peromyscus polionotus subgriseus, Capra hircus, Pan troglodytes verus, Macaca mulatta



ABOUT THIS RECORD

ID: MNEST009812
species: Pan troglodytes verus
miRNA family: miR-1972
source: miRNEST

Taxonomy by NCBI:
Pan troglodytes verus Pan troglodytes Pan Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCAGGCCAGGCGCGGTGGCTC

miRNA*
 GCACTTTGCAAGGCCGAGG

mismatches: 4
bulges: 2
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pre-miRNA
 CCCCAAGATGAGGAAGCCCCTTCAGGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGCAAGGCCGAGGAGGGTGGATCACTTGAGG

dot-bracket secondary structure
.((((((.(((....((((((((.((((..(((.((((.((...............)))))).)))..)))))))).))))...))))))).))


SIMILARITIES
miRBase hsa-mir-5095: 0.00000002

PMRD ptc-miRf12412-akr: 0.00000000000008

microPC no hits		UniProt sp|Q8NHA8|OR1FC_HUMAN: 0.00002

RFAM Metazoa_SRP: 1e-22		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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