miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Caenorhabditis elegans, Ancylostoma caninum, Ascaris suum, Heterorhabditis bacteriophora, Pristionchus pacificus, Caenorhabditis japonica, Caenorhabditis brenneri, Strongyloides ratti, Brugia malayi, Meloidogyne hapla, Heterodera glycines, Meloidogyne incognita, Caenorhabditis remanei, Onchocerca volvulus, Nippostrongylus brasiliensis, Meloidogyne chitwoodi, Globodera rostochiensis, Strongyloides stercoralis, Ancylostoma ceylanicum



ABOUT THIS RECORD

ID: MNEST009822
species: Globodera rostochiensis
miRNA family: mir-1322
source: miRNEST

Taxonomy by NCBI:
Globodera rostochiensis Globodera Heteroderinae Heteroderidae Tylenchoidea Tylenchina Tylenchida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GCTGCTGCTGCTGTTGCTCTT

miRNA*
 GGGCGACGGTGGAGGCAGCAC

mismatches: 3
bulges: 0
View larger
pre-miRNA
 ATCGACGACGGCGGGCGACGGTGGAGGCAGCACAAAAGCGATGTGCATGAAACGCCGCTGCTGCTGCTGCTGTTGCTCTTGTTGCTGTT

dot-bracket secondary structure
..((.((((((.((((((((((((.(((((((.....(((.(((.......))).)))))))))).)))))))))))))))))).))..


SIMILARITIES
miRBase dme-mir-4968: 0.0003

PMRD no hits

microPC no hits		UniProt no hits

RFAM mir-598: 0.000005		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;