ABOUT THIS RECORDspecies: Globodera rostochiensis
miRNA family: mir-1322
source: miRNEST
Taxonomy by NCBI:
Globodera rostochiensis Globodera Heteroderinae Heteroderidae Tylenchoidea Tylenchina Tylenchida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTGCTGCTGCTGTTGCTCTT miRNA* GGGCGACGGTGGAGGCAGCAC mismatches: 3 bulges: 0 |
pre-miRNA
ATCGACGACGGCGGGCGACGGTGGAGGCAGCACAAAAGCGATGTGCATGAAACGCCGCTGCTGCTGCTGCTGTTGCTCTTGTTGCTGTT
dot-bracket secondary structure
..((.((((((.((((((((((((.(((((((.....(((.(((.......))).)))))))))).)))))))))))))))))).))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATCGACGACGGCGGGCGACGGTGGAGGCAGCACAAAAGCGATGTGCATGAAACGCCGCTGCTGCTGCTGCTGTTGCTCTTGTTGCTGTT
dot-bracket secondary structure
..((.((((((.((((((((((((.(((((((.....(((.(((.......))).)))))))))).)))))))))))))))))).))..
SIMILARITIES| miRBase dme-mir-4968: 0.0003 PMRD no hits microPC no hits | UniProt no hits RFAM mir-598: 0.000005 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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