ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIRf88
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTTTAGTCCCGGTTGGAGCG miRNA* CACCGCCCCGGGATTAAAGACC mismatches: 4 bulges: 1 |
pre-miRNA
CCGGGCTGAGGGGCTTTAGTCCCGGGTGGAGCACCGCCCCGGGATTAAAGACCCCCTTTAGTCCCGGTTGGAGCGCCGCGCCGGGACTAAAGGCCCCTGC
TTTCCCGCCTTCTG
dot-bracket secondary structure
.((((...(((((((((((((((((((((.((.(((..((((((((((((.....)))))))))))).))).)).)))).))))))))))).))))))..
...)))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCGGGCTGAGGGGCTTTAGTCCCGGGTGGAGCACCGCCCCGGGATTAAAGACCCCCTTTAGTCCCGGTTGGAGCGCCGCGCCGGGACTAAAGGCCCCTGC
TTTCCCGCCTTCTG
dot-bracket secondary structure
.((((...(((((((((((((((((((((.((.(((..((((((((((((.....)))))))))))).))).)).)))).))))))))))).))))))..
...)))).......
SIMILARITIES| miRBase no hits PMRD osa-miRf11166-akr: 0.00009 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
