ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR2033
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGTTCTTTACAGAGGGAGTA miRNA* CCCTCCGTGAAGAAATATA mismatches: 4 bulges: 0 |
pre-miRNA
TAATGGCCAGTTGAGTTGGGTTCCCTCCGTGAAGAAATATAAGAGCGTTTAGATCACTAAAGTAGTGATGTAAATGCTCTTATAGTTCTTTACAGAGGGA
GTACCTACCAATTCCCACAGAC
dot-bracket secondary structure
...(((..(((((.((.((((((((((.((((((((.((((((((((((((.(((((((...))))))).)))))))))))))).)))))))).))))))
..))))))))))).))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
TAATGGCCAGTTGAGTTGGGTTCCCTCCGTGAAGAAATATAAGAGCGTTTAGATCACTAAAGTAGTGATGTAAATGCTCTTATAGTTCTTTACAGAGGGA
GTACCTACCAATTCCCACAGAC
dot-bracket secondary structure
...(((..(((((.((.((((((((((.((((((((.((((((((((((((.(((((((...))))))).)))))))))))))).)))))))).))))))
..))))))))))).))).....
SIMILARITIES| miRBase tae-MIR1121: 3e-20 PMRD tae-miR1121: 3e-20 microPC miR1121: 0.0000000001 | UniProt no hits RFAM MIR1122: 9e-24 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
