ABOUT THIS RECORDspecies: Coregonus clupeaformis
miRNA family: miR-1638
source: miRNEST
Taxonomy by NCBI:
Coregonus clupeaformis Coregonus Coregoninae Salmonidae Salmonoidei Salmoniformes Protacanthopterygii Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTATTTTGTGTTTTTTGTTTT miRNA* AAGGATGATTAAGAATCACGA mismatches: 4 bulges: 2 |
pre-miRNA
GACTCGTTGATATTGATTCTTGTATTTTGTGTTTTTTGTTTTGTTTGGCAGATGTATCATGTGCAGCGTAGCCTACGGAAGGATGATTAAGAATCACGAA
GAATATGTACATTAGAG
dot-bracket secondary structure
..(((..((.(((..(((((((((((((..(((..((.((((((..(((...(((((...))))).....))).)))))).)).)))..))))).)).))
))))..)))))...)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GACTCGTTGATATTGATTCTTGTATTTTGTGTTTTTTGTTTTGTTTGGCAGATGTATCATGTGCAGCGTAGCCTACGGAAGGATGATTAAGAATCACGAA
GAATATGTACATTAGAG
dot-bracket secondary structure
..(((..((.(((..(((((((((((((..(((..((.((((((..(((...(((((...))))).....))).)))))).)).)))..))))).)).))
))))..)))))...)))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
