ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTCCCTCCGTCTCAAAATA miRNA* TTTTAGGACCGAGGGAATATA mismatches: 3 bulges: 0 |
pre-miRNA
GGCTTCTGTTATACTCCCTCCGTCTCAAAATAACTGTCTCAACTTTGTACTAGAGCTAATACAAAGTTGTACTAAGCTTAAGACACTTATTTTAGGACCG
AGGGAATATATAGCATAG
dot-bracket secondary structure
.(((.....((((.((((((.((((.(((((((.(((((((((((((((.((....)).))))))))))...........))))).))))))).)))).)
))))).)))).)))....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGCTTCTGTTATACTCCCTCCGTCTCAAAATAACTGTCTCAACTTTGTACTAGAGCTAATACAAAGTTGTACTAAGCTTAAGACACTTATTTTAGGACCG
AGGGAATATATAGCATAG
dot-bracket secondary structure
.(((.....((((.((((((.((((.(((((((.(((((((((((((((.((....)).))))))))))...........))))).))))))).)))).)
))))).)))).)))....
SIMILARITIES| miRBase no hits PMRD hpr-miR1120: 0.00000009 microPC miR1439: 3e-32 | UniProt no hits RFAM MIR1122: 4e-44 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
