miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Sus scrofa, Bos taurus, Rattus norvegicus, Canis lupus familiaris, Ovis aries, Macaca fascicularis, Trichosurus vulpecula, Papio anubis, Homo sapiens, Peromyscus maniculatus bairdii, Pongo abelii, Ursus americanus, Equus caballus, Oryctolagus cuniculus, Macaca nemestrina, Cavia porcellus, Bos indicus, Bos sp., Macropus eugenii, Peromyscus polionotus subgriseus, Capra hircus, Pan troglodytes verus, Macaca mulatta

ABOUT THIS RECORD

ID: MNEST009946
species: Macaca mulatta
miRNA family: mir-548
source: miRNEST

Taxonomy by NCBI:
Macaca mulatta Macaca Cercopithecinae Cercopithecidae Cercopithecoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
GTTGGTGCAAAAGTAATTGCA

miRNA*
CAATTGCTTTTGCACCAACCT

mismatches: 2
bulges: 0

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pre-miRNA
TATATATTTAAGTTGGTGCAAAAGTAATTGCAAGTTTTGCCATTGGAAGGAATGGCAAAACCACAATTGCTTTTGCACCAACCTAATAATTT

dot-bracket secondary structure
.......(((.(((((((((((((((((((...(((((((((((......)))))))))))..))))))))))))))))))).)))......

SIMILARITIES

miRBase hsa-mir-548a-3: 5e-18

PMRD no hits

microPC no hits

UniProt no hits

RFAM mir-548: 4e-16

most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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