miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Euphorbia esula, Hevea brasiliensis, Jatropha curcas, Linum usitatissimum, Manihot esculenta, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Bruguiera gymnorhiza, Populus trichocarpa, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST009954
species: Populus trichocarpa x Populus deltoides
miRNA family: MIRf548
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTAAGCTGTTAGATGAGGTCC

miRNA*
 TCTTCATCAACAGCTTTAGGA

mismatches: 3
bulges: 2
View larger
pre-miRNA
 GAACCATTTCAACCTAAAATCTTAAGCTGTTAGATGAGGTCCCATGATATGATTTATATTATTCTCTAACACTGAATTTCAGAAATTAAAACCGGAGCCA
AATTATCAAATGGCATAGCAGAATCCCATTTTCATTCATAGCTATGTTGCTAGTAAATTTTAACTACTACCACTACTATAAGCTAAGCATTCTGGTGGAT
TCTTCTTTTTTTTTTAGTTCCACATAAGCACTATGGTGACAGAAACGCCTTGTAGTCTAAATCTATGAAGCACAAGCAGGCACAAGGCATGAAAACAATC
CGGGGCATTTCTTCCGCTTGGCAGAGCGGAGGAGCTCTGGTGGGATTTTGTAGAGATCTTCATCAACAGCTTTAGGAGGCTTAAGAGGAACTTT

dot-bracket secondary structure
(((....)))..(((....((((((((((((.(((((((....((((((((...))))))))(((((....((((...))))...((.......))((((
..........))))...((((((((((((((((((((.(((((..((((.(((((.........))))).))..))....))))).((......(((((.
.((............)).)))))....))....((....)))))..(((((((.((((...................))))))))))).))))))....(
((((((...((((((((((....))))))))))))))))))))))))))))))))).))))))))))))).))))))........)))......


SIMILARITIES
miRBase ptc-MIR481b: 0.000000000000001

PMRD ptc-miR481b: 0.000000000000001

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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