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Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST009956
species: Populus trichocarpa x Populus deltoides
miRNA family: MIR396
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AAGAAAGCTGTGGGAGAACAT

miRNA*
 GCTTTTCCACAGCTTTCTTGA

mismatches: 1
bulges: 0
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pre-miRNA
 GTTTAATCTCGCAAGTCCTGGTCATGCTTTTCCACAGCTTTCTTGAACTTCTTTGCCTTGCTTAATCTGTGTATATATAGATCACTACATGTACAGCTCC
TATATATATAAATATATGTATGTATAGCGCCATGGAAGCTCAAGAAAGCTGTGGGAGAACATGGCAATTCAGGATTTTTTTGGGCTCTTTT

dot-bracket secondary structure
.......((((.((((((((((((((.(((((((((((((((((((.(((((..((...((........(((((((.(((....))).)))))))))..(
((((((((((......))))))))))).))...))))).))))))))))))))))))).))))))....))))))))...)))).......


SIMILARITIES
miRBase ptc-MIR396e: 2e-40

PMRD ptc-miR396e: 2e-40

microPC miR396: 2e-34		UniProt no hits

RFAM MIR396: 4e-39		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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