ABOUT THIS RECORDspecies: Populus trichocarpa x Populus deltoides
miRNA family: MIR396
source: miRNEST
Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGAAAGCTGTGGGAGAACAT miRNA* GCTTTTCCACAGCTTTCTTGA mismatches: 1 bulges: 0 |
pre-miRNA
GTTTAATCTCGCAAGTCCTGGTCATGCTTTTCCACAGCTTTCTTGAACTTCTTTGCCTTGCTTAATCTGTGTATATATAGATCACTACATGTACAGCTCC
TATATATATAAATATATGTATGTATAGCGCCATGGAAGCTCAAGAAAGCTGTGGGAGAACATGGCAATTCAGGATTTTTTTGGGCTCTTTT
dot-bracket secondary structure
.......((((.((((((((((((((.(((((((((((((((((((.(((((..((...((........(((((((.(((....))).)))))))))..(
((((((((((......))))))))))).))...))))).))))))))))))))))))).))))))....))))))))...)))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTTTAATCTCGCAAGTCCTGGTCATGCTTTTCCACAGCTTTCTTGAACTTCTTTGCCTTGCTTAATCTGTGTATATATAGATCACTACATGTACAGCTCC
TATATATATAAATATATGTATGTATAGCGCCATGGAAGCTCAAGAAAGCTGTGGGAGAACATGGCAATTCAGGATTTTTTTGGGCTCTTTT
dot-bracket secondary structure
.......((((.((((((((((((((.(((((((((((((((((((.(((((..((...((........(((((((.(((....))).)))))))))..(
((((((((((......))))))))))).))...))))).))))))))))))))))))).))))))....))))))))...)))).......
SIMILARITIES| miRBase ptc-MIR396e: 2e-40 PMRD ptc-miR396e: 2e-40 microPC miR396: 2e-34 | UniProt no hits RFAM MIR396: 4e-39 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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