ABOUT THIS RECORDspecies: Populus trichocarpa x Populus deltoides
miRNA family: MIRf1192
source: miRNEST
Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACGGAGGCATTGACGGAGG miRNA* TCCGTTAACTCCCCGTCGTC mismatches: 2 bulges: 1 |
pre-miRNA
CATGTAATAATCCGAAGACGGTGACGGAGGCATTGACGGAGGTGGCGCCCTTAAATCTTTAAAATACTCCCTTATATCCACCCCAGCTGCCGTTGCCCTC
TCCGTTAACTCCCCGTCGTCTCTCGACGGAATAAACGG
dot-bracket secondary structure
.......((.((((..((.((((((((.((..((((((((((.((((..............................................)))).))
))))))))..)))))))).)).))..)))).)).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
CATGTAATAATCCGAAGACGGTGACGGAGGCATTGACGGAGGTGGCGCCCTTAAATCTTTAAAATACTCCCTTATATCCACCCCAGCTGCCGTTGCCCTC
TCCGTTAACTCCCCGTCGTCTCTCGACGGAATAAACGG
dot-bracket secondary structure
.......((.((((..((.((((((((.((..((((((((((.((((..............................................)))).))
))))))))..)))))))).)).))..)))).)).....
SIMILARITIES| miRBase no hits PMRD ptc-miRf11809-akr: 1e-62 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: ptc-miRf11809-akr from PMRD (MNEST053631) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
