ABOUT THIS RECORDspecies: Populus trichocarpa x Populus deltoides
miRNA family: MIR168
source: miRNEST
Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGGTCGGGAA miRNA* CCCGCCTTGCATCAACTGAAT mismatches: 3 bulges: 0 |
pre-miRNA
TTTTTAGTTACCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGATTCGGCGATTTGATTGCCAGATGGCTAAACACGATTGGCTGTGAGGCAAA
TTATAAAAAGAAAGAGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGACCGCGGTGAAGACGAC
dot-bracket secondary structure
.......((((((.((((((((.(((((.((((((((((.(((((.(((((((.....(((..(((((..((((((((......))))))))..))))).
......)))......))))))).))))).)))))))))).))))).)))))))))))))).......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTTTTAGTTACCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGATTCGGCGATTTGATTGCCAGATGGCTAAACACGATTGGCTGTGAGGCAAA
TTATAAAAAGAAAGAGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGACCGCGGTGAAGACGAC
dot-bracket secondary structure
.......((((((.((((((((.(((((.((((((((((.(((((.(((((((.....(((..(((((..((((((((......))))))))..))))).
......)))......))))))).))))).)))))))))).))))).)))))))))))))).......
SIMILARITIES| miRBase ptc-MIR168b: 3e-73 PMRD ptc-miR168b: 3e-73 microPC miR168: 2e-62 | UniProt no hits RFAM MIR168: 3e-83 | most similar mature miRNAs |
Identical with: ptc-miR168b from PMRD (MNEST051651) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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