miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Cucumis melo subsp. melo, Euonymus alatus, Euphorbia esula, Fagus sylvatica, Fragaria vesca, Fragaria x ananassa, Glycine soja, Glycyrrhiza uralensis, Hevea brasiliensis, Humulus lupulus, Jatropha curcas, Juglans hindsii x Juglans regia, Linum usitatissimum, Lotus japonicus, Manihot esculenta, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Prunus armeniaca, Prunus persica, Quercus petraea, Quercus robur, Trifolium pratense, Bruguiera gymnorhiza, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Populus trichocarpa, Phaseolus vulgaris, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST009969
species: Populus trichocarpa x Populus deltoides
miRNA family: MIRf1080
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCCTAATCAGGGCACTGCAAT

miRNA*
 TGCAGTGCCTTGATTTGGGCT

mismatches: 1
bulges: 0
View larger
pre-miRNA
 GTCTCTCGTGAACGAAGGAGGCCCTAATCAGGGCACTGCAATTCTAAATGTCTGTTGGCAAGTGGCGATGCCAGACGTTTGAAATTTACATCATTTATTA
GTCAGAATTGCAGTGCCTTGATTTGGGCTTTGTTTGTTCCTGTAACC

dot-bracket secondary structure
......((.(((((((.(((((((.(((((((((((((((((((((((((((...(((((........))))))))))))....................
...)))))))))))))))))))).))))))).))))))).)).....


SIMILARITIES
miRBase ptc-MIR1447: 8e-55

PMRD ptc-miRf11238-akr: 2e-58

microPC miR1447: 1e-50		UniProt no hits

RFAM no hits		most similar mature miRNAs

Identical with: miR1447 from microPC (MNEST045142)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;