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Species belonging to selected taxon:

Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST009972
species: Populus trichocarpa x Populus deltoides
miRNA family: MIRf1205
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGCAGAGCATGGATGGAGCTA

miRNA*
 GCTCTACCCATGCACTGCCTC

mismatches: 2
bulges: 0
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pre-miRNA
 TACGTAAACAGGGNATCGTGGGGAGAGGGAGCAGAAAGAGACAGATGAAGACGGGGAACAGGCAGAGCATGGATGGAGCTACTAACAGAAGTACATGTTT
TGGCTCTACCCATGCACTGCCTCTTCCCTGGCTTGTGGCTCTTCTTTTTCTCCTCCCTTCTTTTGTTTCCATTTACTTTT

dot-bracket secondary structure
...(((((..(((...((.((((..((((((.(((((((((.(((..(((.(((((((.((((((.((((((.((((((((..((((........)))).
)))))))).)))))).)))))).))))))).))).....)))))))))))).)))))))))).))..))).)))))....


SIMILARITIES
miRBase ptc-MIR408: 3e-52

PMRD ptc-miR408: 3e-52

microPC miR408: 9e-43		UniProt no hits

RFAM MIR408: 1e-54		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
Source sequences
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