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Species belonging to selected taxon:

Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST009977
species: Populus trichocarpa x Populus deltoides
miRNA family: MIR172
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGAATCTTGATGATGCTCCAC

miRNA*
 GCAGCATCATCAAGATTCTCACT

mismatches: 2
bulges: 2
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pre-miRNA
 TTTTTTTTTGCAAGTCCTTTTGTGTTGTATAGTCGTTTATTGCCGATGCAGCATCATCAAGATTCTCACTTCCAAAGAACTTTGGCAGATGAACAGAAAC
AAAGAAAGATTTAACTCTTAACATCACCGGCCGTGCATTTGCATGTGAATCTTGATGATGCTCCACCCGCAAACAACGATTGTCAATATTTCCATGCACA
AGAACCCCTTTAG

dot-bracket secondary structure
..(((((.((((.........((((((.(((((((((..((((...((.((((((((((((((..((((...((((......((((.((((...(((...
...............)))...))))....))))....))))...)))))))))))))))))).))...))))..))))))))))))))).....)))).)
)))).........


SIMILARITIES
miRBase ptc-MIR172b: 2e-75

PMRD ptc-miRf10081-akr: 1e-79

microPC miR172: 0.000003		UniProt no hits

RFAM mir-172: 8e-75		most similar mature miRNAs

Identical with: ptc-miRf10081-akr from PMRD (MNEST051903)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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