ABOUT THIS RECORDspecies: Actinidia deliciosa
miRNA family: MIR2673
source: miRNEST
Taxonomy by NCBI:
Actinidia deliciosa Actinidia Actinidiaceae Ericales asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTCTTCCTCTTCCTCTTCCT miRNA* AGAGAGAGAGAGAGAGAGAGA mismatches: 4 bulges: 0 |
pre-miRNA
GCCTTCCTCTTCCTCTTCCTCTTCCTGCGGGGACAATGGTTTTGTTTTATTATTATAGTTGGAGTCAAAATAGGTGGCGACCGTGAGGTGGGGTTTCCCTA
GCAAAGCCAAGCCGTGACTGCAATTGCCACTGCAACACTCGACATTTACCCAGAGAGAGAGAGAGAGAGAGAGAG
dot-bracket secondary structure
).(((.(((((.(((((.(((((.(((.((.......(((.((((..........((((((.(((((.....(((.((.(((....)))((((...)))).
))...)))......))))).)))))).....)))).))).........))))).))))).))))).))))).)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCCTTCCTCTTCCTCTTCCTCTTCCTGCGGGGACAATGGTTTTGTTTTATTATTATAGTTGGAGTCAAAATAGGTGGCGACCGTGAGGTGGGGTTTCCCTA
GCAAAGCCAAGCCGTGACTGCAATTGCCACTGCAACACTCGACATTTACCCAGAGAGAGAGAGAGAGAGAGAGAG
dot-bracket secondary structure
).(((.(((((.(((((.(((((.(((.((.......(((.((((..........((((((.(((((.....(((.((.(((....)))((((...)))).
))...)))......))))).)))))).....)))).))).........))))).))))).))))).))))).)))
SIMILARITIES| miRBase mtr-MIR2673b: 9.0E-6 PMRD no hits microPC no hits | UniProt no hits RFAM K7SK: 4.0E-5 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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