ABOUT THIS RECORDspecies: Actinidia deliciosa
miRNA family: MIRf99
source: miRNEST
Taxonomy by NCBI:
Actinidia deliciosa Actinidia Actinidiaceae Ericales asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGAACCGAACCGAACCGGACG miRNA* TCCTTATTCGGTTCGGTTTGAT mismatches: 4 bulges: 1 |
pre-miRNA
CCTTTGGTTCCTTATTCGGTTCGGTTTGATTCTGGGTAAAAATTCTTATAGACCCGAGAACCGAACCGAACCGAACCGGACGGGTC
dot-bracket secondary structure
).......(((...((((((((((((((.((((((((..............)))).)))).))))))))))))))..)))......
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCTTTGGTTCCTTATTCGGTTCGGTTTGATTCTGGGTAAAAATTCTTATAGACCCGAGAACCGAACCGAACCGAACCGGACGGGTC
dot-bracket secondary structure
).......(((...((((((((((((((.((((((((..............)))).)))).))))))))))))))..)))......
SIMILARITIES| miRBase no hits PMRD ptc-miRf12527-akr: 6.0E-5 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
