ABOUT THIS RECORDspecies: Allium cepa
miRNA family: MIR444
source: miRNEST
Taxonomy by NCBI:
Allium cepa Allium Allieae Allioideae Amaryllidaceae Asparagales Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTTGTCTCAAACTTGCTGCC miRNA* CAGCCAGTTTGAGATAACAAT mismatches: 1 bulges: 0 |
pre-miRNA
TTGCAGTTCTTGAAGGAGGAGGCAGCCAGTTTGAGATAACAATTGTGTATTTTGCAAAGAATTGATTGCTCAACTCCATGGGAGGCTGTAGTGCCAAATG
TGATGTATTCTAACTGTTGTCTCAAACTTGCTGCCTCCCACTATGAGAACTGGT
dot-bracket secondary structure
...(((((((((.((..(((((((((.((((((((((((((.(((.((((.(((((........(((((....((((...))))...)))))......))
))).))))..))).)))))))))))))).)))))))))..)).)))))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTGCAGTTCTTGAAGGAGGAGGCAGCCAGTTTGAGATAACAATTGTGTATTTTGCAAAGAATTGATTGCTCAACTCCATGGGAGGCTGTAGTGCCAAATG
TGATGTATTCTAACTGTTGTCTCAAACTTGCTGCCTCCCACTATGAGAACTGGT
dot-bracket secondary structure
...(((((((((.((..(((((((((.((((((((((((((.(((.((((.(((((........(((((....((((...))))...)))))......))
))).))))..))).)))))))))))))).)))))))))..)).)))))))))..
SIMILARITIES| miRBase osa-MIR444c: 0.0001 PMRD pvi-miR444: 0.0001 microPC miR444: 1e-60 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: miR444 from microPC (MNEST045928) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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