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ABOUT THIS RECORD

ID: MNEST000036
species: Amborella trichopoda
miRNA family: MIRf240
source: miRNEST

Taxonomy by NCBI:
Amborella trichopoda Amborella Amborellaceae Amborellales basal Magnoliophyta Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGTTCAAGAAATCTGTGGAGA

miRNA*
 TCCACAGGCTTTCTTGAACATG

mismatches: 1
bulges: 1
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pre-miRNA
 GCCAGCTGAAGATTTGATGTTTTCATGCTTTCCACAGGCTTTCTTGAACATGGTATTCCGACGGGCCCTCTTCGAGTTAGCTATCAGAGATGCAATGTTG
AGTAACAGGTTCAAGAAATCTGTGGAGAAACATGGAAACAATCATGACTCTGCGT

dot-bracket secondary structure
....((.((.....(((((((((((((.((((((((((.((((((((((.((.(((((.((((.((..((((.((........)).)))).))..)))))
)))).)).))))))))))))))))))))..))))))))).))))....)).))..


SIMILARITIES
miRBase zma-MIR396d: 0.0000001

PMRD osa-miR396e: 0.0000001

microPC miR396: 2e-49		UniProt no hits

RFAM MIR396: 0.000002		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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