ABOUT THIS RECORDspecies: Amborella trichopoda
miRNA family: MIRf240
source: miRNEST
Taxonomy by NCBI:
Amborella trichopoda Amborella Amborellaceae Amborellales basal Magnoliophyta Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGTTCAAGAAATCTGTGGAGA miRNA* TCCACAGGCTTTCTTGAACATG mismatches: 1 bulges: 1 |
pre-miRNA
TGCCAGCTGAAGATTTGATGTTTTCATGCTTTCCACAGGCTTTCTTGAACATGGTATTCCGACGGGCCCTCTTCGAGTTAGCTATCAGAGATGCAATGTTG
AGTAACAGGTTCAAGAAATCTGTGGAGAAACATGGAAACAATCATGACTCTGCGT
dot-bracket secondary structure
)....((.((.....(((((((((((((.((((((((((.((((((((((.((.(((((.((((.((..((((.((........)).)))).))..)))))
)))).)).))))))))))))))))))))..))))))))).))))....)).))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGCCAGCTGAAGATTTGATGTTTTCATGCTTTCCACAGGCTTTCTTGAACATGGTATTCCGACGGGCCCTCTTCGAGTTAGCTATCAGAGATGCAATGTTG
AGTAACAGGTTCAAGAAATCTGTGGAGAAACATGGAAACAATCATGACTCTGCGT
dot-bracket secondary structure
)....((.((.....(((((((((((((.((((((((((.((((((((((.((.(((((.((((.((..((((.((........)).)))).))..)))))
)))).)).))))))))))))))))))))..))))))))).))))....)).))..
SIMILARITIES| miRBase zma-MIR396d: 1.0E-7 PMRD osa-miR396e: 1.0E-7 microPC miR396: 2.0E-49 | UniProt no hits RFAM 6MIR396: 2.0E-6 | most similar mature miRNAs |
Identical with: miR396 from microPC (MNEST045851) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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