ABOUT THIS RECORDspecies: Amborella trichopoda
miRNA family: miR156a
source: miRNEST
Taxonomy by NCBI:
Amborella trichopoda Amborella Amborellaceae Amborellales basal Magnoliophyta Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTCACTTCTCTCTCTTTCAA miRNA* CTAGAGAGAGAATGGAGGAG mismatches: 5 bulges: 1 |
pre-miRNA
TTGGTATAACTTCAAAGCCTCTCTCACTTCTCTCTCTTTCAATCACGTGCGTTGGGTTTCTTCCTTTGTTAATCAAACTGAGAAATCTTGGGTTCTAGAG
AGAGAATGGAGGAGGAAGAAGGGGAAGAGTAT
dot-bracket secondary structure
.........((((....((((.(((..((((((((((...((((.........(((((((((..((((.....))))..)))))))))..))))..))))
))))))..)))))))..))))...........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTGGTATAACTTCAAAGCCTCTCTCACTTCTCTCTCTTTCAATCACGTGCGTTGGGTTTCTTCCTTTGTTAATCAAACTGAGAAATCTTGGGTTCTAGAG
AGAGAATGGAGGAGGAAGAAGGGGAAGAGTAT
dot-bracket secondary structure
.........((((....((((.(((..((((((((((...((((.........(((((((((..((((.....))))..)))))))))..))))..))))
))))))..)))))))..))))...........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
