miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

ABOUT THIS RECORD

ID: MNEST000039
species: Amborella trichopoda
miRNA family: MIRf93
source: miRNEST

Taxonomy by NCBI:
Amborella trichopoda Amborella Amborellaceae Amborellales basal Magnoliophyta Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
ACAGGACACAAGGACAATGCA

miRNA*
CACTTGCCATGTGCCCTACTG

mismatches: 4
bulges: 2

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pre-miRNA
ATCTGATTTTGACAGGACACAAGGACAATGCAGAGTTTGCACTTGCCATGTGCCCTACTGACCCTTAT

dot-bracket secondary structure
.............(((.((((.((.(((((((.....)))).))))).)))).)))............

SIMILARITIES

miRBase no hits

PMRD no hits

microPC no hits

UniProt sp|O22607|MSI4_ARATH: 0.00004

RFAM no hits

most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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