miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST000060
species: Aquilegia formosa x Aquilegia pubescens
miRNA family: miR166d
source: miRNEST

Taxonomy by NCBI:
Aquilegia formosa x Aquilegia pubescens Aquilegia Ranunculaceae Ranunculales stem eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGAATGTTGTCTGGCTCGAGG

miRNA*
 GTCGGACCAGGCTTCATTCCCC

mismatches: 3
bulges: 1
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pre-miRNA
 ATTGGAAGCTTTCTTTTTGAGAGGAATGTTGTCTGGCTCGAGGCCACTAACTTAACAACTCTTAATTGAAACTCTATCTATAACCGGTTAGCAAGTGAAA
GCGCTTGTGCGCGCTGGTGTTTGTTTGTTTGTGTCGTCGGACCAGGCTTCATTCCCCTCAATTACAGTTTCTACTC

dot-bracket secondary structure
..((((((((......(((((.((((((..((((((.(((((((.((.(((..(((((........................((((((..(((((((...
.)))))))....))))))..))))).))).))))).)))).))))))..)))))).)))))....))))))))...


SIMILARITIES
miRBase aqc-MIR166e: 3e-70

PMRD aqc-miR166e: 3e-70

microPC miR166: 0.0000000006		UniProt no hits

RFAM mir-166: 0.00000004		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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