ABOUT THIS RECORDspecies: Arachis duranensis
miRNA family: MIR162
source: miRNEST
Taxonomy by NCBI:
Arachis duranensis Arachis Dalbergieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCAG miRNA* GGAGGCAACGGTTCATCGATC mismatches: 4 bulges: 0 |
pre-miRNA
TGAATTAGCGTATGAATTTGTAAGGTGAAGTCACTGGAGGCAACGGTTCATCGATCTCTTCCTGAATTTGGCTGTGGAATCATACACAAAGCAAGAATCG
GTCGATAAACCTCTGCATCCAGCGCTCACTTTGCCTCTTTTTCGTGTTTTTCTTTCTTTAA
dot-bracket secondary structure
.(((...(((...(((...(((((((((.((..(((((.(((..((((.(((((((..(((.((..((((..((((....))))..)))).)).)))..)
)))))).))))..))).))))).)))))))))))....))).)))....))).........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGAATTAGCGTATGAATTTGTAAGGTGAAGTCACTGGAGGCAACGGTTCATCGATCTCTTCCTGAATTTGGCTGTGGAATCATACACAAAGCAAGAATCG
GTCGATAAACCTCTGCATCCAGCGCTCACTTTGCCTCTTTTTCGTGTTTTTCTTTCTTTAA
dot-bracket secondary structure
.(((...(((...(((...(((((((((.((..(((((.(((..((((.(((((((..(((.((..((((..((((....))))..)))).)).)))..)
)))))).))))..))).))))).)))))))))))....))).)))....))).........
SIMILARITIES| miRBase vvi-MIR162: 0.000000000000002 PMRD vvi-miR162: 0.000000000000002 microPC miR162: 2e-31 | UniProt no hits RFAM MIR162_2: 0.0000000006 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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