ABOUT THIS RECORDspecies: Arachis duranensis
miRNA family: MIR162
source: miRNEST
Taxonomy by NCBI:
Arachis duranensis Arachis Dalbergieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCAG miRNA* GGAGGCAACGGTTCATCGATC mismatches: 4 bulges: 0 |
pre-miRNA
ATGAATTAGCGTATGAATTTGTAAGGTGAAGTCACTGGAGGCAACGGTTCATCGATCTCTTCCTGAATTTGGCTGTGGAATCATACACAAAGCAAGAATCG
GTCGATAAACCTCTGCATCCAGCGCTCACTTTGCCTCTTTTTCGTGTTTTTCTTTCTTTAA
dot-bracket secondary structure
).(((...(((...(((...(((((((((.((..(((((.(((..((((.(((((((..(((.((..((((..((((....))))..)))).)).)))..)
)))))).))))..))).))))).)))))))))))....))).)))....))).........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATGAATTAGCGTATGAATTTGTAAGGTGAAGTCACTGGAGGCAACGGTTCATCGATCTCTTCCTGAATTTGGCTGTGGAATCATACACAAAGCAAGAATCG
GTCGATAAACCTCTGCATCCAGCGCTCACTTTGCCTCTTTTTCGTGTTTTTCTTTCTTTAA
dot-bracket secondary structure
).(((...(((...(((...(((((((((.((..(((((.(((..((((.(((((((..(((.((..((((..((((....))))..)))).)).)))..)
)))))).))))..))).))))).)))))))))))....))).)))....))).........
SIMILARITIES| miRBase vvi-MIR162: 2.0E-15 PMRD vvi-miR162: 2.0E-15 microPC miR162: 2.0E-31 | UniProt no hits RFAM 2MIR162_2: 6.0E-10 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
