ABOUT THIS RECORDspecies: Arachis ipaensis
miRNA family: MIR162
source: miRNEST
Taxonomy by NCBI:
Arachis ipaensis Arachis Dalbergieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCGATAAACCTCTGCATCCAG miRNA* GGAGGCAGCGGTTCATCGATC mismatches: 4 bulges: 0 |
pre-miRNA
AATTTGTAAGGTGAAGTCACTGGAGGCAGCGGTTCATCGATCTCTTCCTGAAATTTGGCTGTGGAATCCTACACAAAGCAAGAATCGGGCGATAAACCTC
TGCATCCAGCGCTCCACTTTGCCTCTT
dot-bracket secondary structure
.....((((((((.(((..(((((.((((.((((.((((.((..(((.((...((((...((((....)))).)))).)).)))..)).)))).)))).)
))).))))).))).)))))))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AATTTGTAAGGTGAAGTCACTGGAGGCAGCGGTTCATCGATCTCTTCCTGAAATTTGGCTGTGGAATCCTACACAAAGCAAGAATCGGGCGATAAACCTC
TGCATCCAGCGCTCCACTTTGCCTCTT
dot-bracket secondary structure
.....((((((((.(((..(((((.((((.((((.((((.((..(((.((...((((...((((....)))).)))).)).)))..)).)))).)))).)
))).))))).))).)))))))).....
SIMILARITIES| miRBase vvi-MIR162: 4e-16 PMRD vvi-miR162: 4e-16 microPC miR162: 2e-27 | UniProt no hits RFAM MIR162_2: 0.00000000003 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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