ABOUT THIS RECORDspecies: Avena barbata
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Avena barbata Avena Aveninae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGTACTCCCTCCGATCCTAAA miRNA* TAGGATCAGAGGGAGTGGTAT mismatches: 4 bulges: 0 |
pre-miRNA
TTTGAAATACTAGTACTCCCTCCGATCCTAAATAAATGTCGCAGTTTTGAACTAACTCTATTTAGGATCAGAGGGAGTGGTATTTTTGTGT
dot-bracket secondary structure
...((((((((...((((((((.(((((((((((...((...((((...)))).))..))))))))))).)))))))))))))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TTTGAAATACTAGTACTCCCTCCGATCCTAAATAAATGTCGCAGTTTTGAACTAACTCTATTTAGGATCAGAGGGAGTGGTATTTTTGTGT
dot-bracket secondary structure
...((((((((...((((((((.(((((((((((...((...((((...)))).))..))))))))))).)))))))))))))))).....
SIMILARITIES| miRBase bdi-MIR5180a: 0.00000002 PMRD no hits microPC no hits | UniProt no hits RFAM MIR1122: 0.000001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
