ABOUT THIS RECORDspecies: Avena barbata
miRNA family: MIRf34
source: miRNEST
Taxonomy by NCBI:
Avena barbata Avena Aveninae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTACATTGTGGAACGGAGGTA miRNA* CCTCTCTTCCACGATATAAGC mismatches: 3 bulges: 0 |
pre-miRNA
CACAAATACTCCCTCTCTTCCACGATATAAGCCCTTTTAGAAAGCTATATAAGATAGCTTGCAAAAAGGTTACATTGTGGAACGGAGGTAGTAAGTGA
dot-bracket secondary structure
(((...((((.(((((.(((((((((.(((..((((((...(((((((.....)))))))...))))))))).))))))))).))))).)))).))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CACAAATACTCCCTCTCTTCCACGATATAAGCCCTTTTAGAAAGCTATATAAGATAGCTTGCAAAAAGGTTACATTGTGGAACGGAGGTAGTAAGTGA
dot-bracket secondary structure
(((...((((.(((((.(((((((((.(((..((((((...(((((((.....)))))))...))))))))).))))))))).))))).)))).))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
