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ABOUT THIS RECORD

ID: MNEST000178
species: Avena barbata
miRNA family: MIR444
source: miRNEST

Taxonomy by NCBI:
Avena barbata Avena Aveninae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCAGTTGTTGTCTCAAGCTT

miRNA*
 GCTCGAGGCAACAACTGCACA

mismatches: 1
bulges: 0
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pre-miRNA
 TCGGCGTGCCAGTTGCTGCAAGTGGAGGCGGCAAGCTCGAGGCAACAACTGCACAATTTGCAAGAATATCCCACTGCAGGCACGATGGCATTACTCCATCT
GCATGGAAGCCCATGAATCCAGCCCCATTGTGCGAATTCTGGCCCGTCAATAGAGGAACACGGGTGTGTGACTAGAGACGTAGAAGTGCAAACTCTGGCC
CGTCAATGGAGGAGCACGGGTTTTCGGGCCATACCGATGATTTTCTTGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAGAACTAC
ATAATT

dot-bracket secondary structure
)....(((..((((.(((((((.((((((((((((((.((((((((((((((((((((((((((((.((((((......(((.(((((.......))))))
)).)))((((((.((..(((....((((((.(((......((((((((..(((....((((....))))..)))..)))).(((.((....)))))))))
))))))))).))).)).))))))((((......)))).))).)))))))))))))))))))))))))))).)))))))))))))).)))).))))))).)
))....


SIMILARITIES
miRBase osa-MIR444c: 3.0E-31

PMRD pvi-miR444: 9.0E-29

microPC miR444: 5.0E-24		UniProt sp|Q6EP49|MAD27_ORYSJ: 1.0E-5

RFAM 4MIR444: 2.0E-27		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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