ABOUT THIS RECORDspecies: Avena barbata
miRNA family: MIR1439
source: miRNEST
Taxonomy by NCBI:
Avena barbata Avena Aveninae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTTGGAACGGAGGGAGTACA miRNA* TACTCCCTCCGTCCTAGAATA mismatches: 4 bulges: 0 |
pre-miRNA
GTAAAACTATCATACTCCCTCCGTCCTAGAATAGATGTCTCAAATTTGTTAAAATTTGGATGAATTGTCTAGATTCATCCAAATTTTAACAAATCTAAGA
CATCTAATTTGGAACGGAGGGAGTACATCAATTTTC
dot-bracket secondary structure
............((((((((((((.(((((.(((((((((...(((((((((((((((((((((((.....)))))))))))))))))))))))...)))
)))))).))))).))))))))))))...........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTAAAACTATCATACTCCCTCCGTCCTAGAATAGATGTCTCAAATTTGTTAAAATTTGGATGAATTGTCTAGATTCATCCAAATTTTAACAAATCTAAGA
CATCTAATTTGGAACGGAGGGAGTACATCAATTTTC
dot-bracket secondary structure
............((((((((((((.(((((.(((((((((...(((((((((((((((((((((((.....)))))))))))))))))))))))...)))
)))))).))))).))))))))))))...........
SIMILARITIES| miRBase tae-MIR1137: 0.0001 PMRD bsy-miR1122: 0.0000000004 microPC miR1439: 0.0001 | UniProt no hits RFAM MIR1122: 0.0000000001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
