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ABOUT THIS RECORD
ID:
MNEST000184
species:
Avena barbata
miRNA family:
MIR414
source:
miRNEST
Taxonomy by NCBI:
Avena barbata
Avena
Aveninae
Poeae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CCATCATCATCATCATCGTCA
miRNA*
ATGATGATGATGGTGATGATG
mismatches:
1
bulges:
0
View larger
pre-miRNA
ACGATCCACTACTTGTTGCTCCTGTTTTCGGCGGTCACCCT
CCATCATCATCATCATCGTCA
TTCTAGGTGCTTGTTCGACGACTTCCTTGTCTTTGTCG
ATCCCATGAGCCTCATCGCAAATTAGAGTTTGTCGATCATCATCTCCATCTCCATTTCCATCCTCCTCTTCCTCCTCCTCCTCATCATTCTTTTCTTCAT
CACGCGTTAACTTGTTATTCTTTGCCGTGTCTTCAAGAGAACTGACAGCTTCTCGATTAACGCTCCCACTGCTGTTACTGCAGTTGCTCCACGATGCAGA
TGATAATGTTGATATTAATG
ATGATGATGATGGTGATGATG
ATGCTGGGAGTAAGAGGCATCAGGCCAGTGGGAGGGAA
dot-bracket secondary structure
....((((((.((((.((((.((.(((((((((.(((....
.((((((((((((((((((((
((..(((((..((.(((((((.(((..((..((((.((
((............)))))))).))))).))))))).)).)))))..(((..((((.........................(((((.(((((((......
((((((.(((....))).....)).)))).....))))))).(((((((.....((.......)).....))))))).((((............))))))
))).))))..)))...))))
)))))))))))))))))).))
))))))))))..)).)))).))))..))))))......
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-598: 0.0004
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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