ABOUT THIS RECORDspecies: Avena sativa
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Avena sativa Avena Aveninae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTCAGTCCCAAAATAAGTGA miRNA* ATTTATTTTGGAAAGGAGCGA mismatches: 5 bulges: 0 |
pre-miRNA
GTCTCTCCTTCTATAATTACTCCCTCAGTCCCAAAATAAGTGATATGGATTTGTCTAGATTCGGATGTATCTAGCCGGATTTTAGTATATAGATACATATG
AATGTAGACTAACCCAAGTCATTTATTTTGGAAAGGAGCGAGTAACTAATTTGACTTTG
dot-bracket secondary structure
)............((.((((((.(((....((((((((((((((.(((.((.(((((.(((((.(((((((((.....((....))...))))))))).))
))).))))).)).))).))))))))))))))....))).)))))).))...........
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTCTCTCCTTCTATAATTACTCCCTCAGTCCCAAAATAAGTGATATGGATTTGTCTAGATTCGGATGTATCTAGCCGGATTTTAGTATATAGATACATATG
AATGTAGACTAACCCAAGTCATTTATTTTGGAAAGGAGCGAGTAACTAATTTGACTTTG
dot-bracket secondary structure
)............((.((((((.(((....((((((((((((((.(((.((.(((((.(((((.(((((((((.....((....))...))))))))).))
))).))))).)).))).))))))))))))))....))).)))))).))...........
SIMILARITIES| miRBase far-MIR1122: 0.0005 PMRD osa-miRf11619-akr: 3.0E-5 microPC miR1439: 3.0E-5 | UniProt no hits RFAM 2MIR1122: 2.0E-7 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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