ABOUT THIS RECORDspecies: Avena sativa
miRNA family: MIR1120
source: miRNEST
Taxonomy by NCBI:
Avena sativa Avena Aveninae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTCCCTCCGTCTCAAAATAG miRNA* ATTTTGAGACGGAGGAAGTAC mismatches: 1 bulges: 0 |
pre-miRNA
GACTAAATACTACTCCCTCCGTCTCAAAATAGATGTCACAGATTTATCAAAATTTAAATGAATCTAGACATTATTTAGGATATAGATACATCCAAATTTT
GTGAAATTCCCGACACCTATTTTGAGACGGAGGAAGTACTAGAAACC
dot-bracket secondary structure
.......((.((((.(((((((((((((((((.((((...(((((..((((((((..(((.(((((....((....))....))))).)))..)))))))
)..)))))...)))).))))))))))))))))).)))).))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GACTAAATACTACTCCCTCCGTCTCAAAATAGATGTCACAGATTTATCAAAATTTAAATGAATCTAGACATTATTTAGGATATAGATACATCCAAATTTT
GTGAAATTCCCGACACCTATTTTGAGACGGAGGAAGTACTAGAAACC
dot-bracket secondary structure
.......((.((((.(((((((((((((((((.((((...(((((..((((((((..(((.(((((....((....))....))))).)))..)))))))
)..)))))...)))).))))))))))))))))).)))).))......
SIMILARITIES| miRBase no hits PMRD bsy-miR1122: 0.0001 microPC miR1439: 0.0001 | UniProt no hits RFAM MIR1122: 0.0000005 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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