ABOUT THIS RECORDspecies: Barnadesia spinosa
miRNA family: MIRf34
source: miRNEST
Taxonomy by NCBI:
Barnadesia spinosa Barnadesia Barnadesioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTTGGGATAGAGGGAGTAAT miRNA* TATTCTCTATATCCTTTTGG mismatches: 3 bulges: 1 |
pre-miRNA
ACATGAACTCCATTTGGGATAGAGGGAGTAATTGTTATAATAGTGGCTATGCACACCTTCAAGAATATCATAAAGTCCGCTTGTCCTTTGCGCGGGAATG
TTTGGGAATAAGTGACTAGTCAAAGTTCTCACTATACCTTTGTTATTATTCTCTATATCCTTTTGGTATTGTTG
dot-bracket secondary structure
.....(((.(((...((((((.((((((((((....((((..(((((((..(((...(((..((((((.......(((((...........))))).)))
)))..)))...)))..)))))..(((....)))..))..)))).)))))))))).))))))..)))....))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ACATGAACTCCATTTGGGATAGAGGGAGTAATTGTTATAATAGTGGCTATGCACACCTTCAAGAATATCATAAAGTCCGCTTGTCCTTTGCGCGGGAATG
TTTGGGAATAAGTGACTAGTCAAAGTTCTCACTATACCTTTGTTATTATTCTCTATATCCTTTTGGTATTGTTG
dot-bracket secondary structure
.....(((.(((...((((((.((((((((((....((((..(((((((..(((...(((..((((((.......(((((...........))))).)))
)))..)))...)))..)))))..(((....)))..))..)))).)))))))))).))))))..)))....))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
