miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST000209
species: Barnadesia spinosa
miRNA family: miR166g
source: miRNEST

Taxonomy by NCBI:
Barnadesia spinosa Barnadesia Barnadesioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGAATGTTGTTTGGCTCGAGG

miRNA*
 TCGGACCAGGCTTCATTCCCC

mismatches: 5
bulges: 0
View larger
pre-miRNA
 TTAGCTTTTGAGGGGAATGTTGTTTGGCTCGAGGTCACTAGAAAACCTTAATTTGATTTTGATCTTAATTTCTCCTTTTTTCTTCTCCGTGTGTGTTTGTG
TACTCAATTAGTCAACGGATCCATGATCCATGATCTTTGTTGATTAATTATTATGAGTTTCAAATTAATGGCATCCGTCGTTTGAGTGATTAAATTAAGG
AGTAAATCTGGATCATTATATAGGATCTGGTGTCATCGGACCAGGCTTCATTCCCCCCAATTCTT

dot-bracket secondary structure
)......(((.((((((((..((((((.((((...(((((((...(((.......((..((((((..((((((((((...((..(((.......(((((..
.((((((((((((((((((((.(((...))))))))..)))))))))).....)))))..))))).((((((....)))))).))).)).......))))
)).))))..))))))..))..))).)))))))...)))).))))))..)))))))).))).....


SIMILARITIES
miRBase ptc-MIR166a: 6.0E-11

PMRD ptc-miR166a: 6.0E-11

microPC miR166: 4.0E-9		UniProt no hits

RFAM 6mir-166: 2.0E-8		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;