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ABOUT THIS RECORD

ID: MNEST000210
species: Barnadesia spinosa
miRNA family: MIR166
source: miRNEST

Taxonomy by NCBI:
Barnadesia spinosa Barnadesia Barnadesioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCCCC

miRNA*
 GGAATGTTGTTTGGCTCGAGG

mismatches: 3
bulges: 0
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pre-miRNA
 TAGCTTTTGAGGGGAATGTTGTTTGGCTCGAGGTCACTAGAAAACCTTAATTTGATTTTGATCTTAATTTCTCCTTTTTTCTTCTCCGTGTGTGTTTGTGT
ACTCAATTAGTCAACGGATCCATGATCCATGATCTTTGTTGATTAATTATTATGAGTTTCAAATTAATGGCATCCGTCGTTTGAGTGATTAAATTAAGGA
GTAAATCTGGATCATTATATAGGATCTGGTGTCATCGGACCAGGCTTCATTCCCCCCAATTCT

dot-bracket secondary structure
).....(((.((((((((..((((((.((((...(((((((...(((.......((..((((((..((((((((((...((..(((.......(((((...
((((((((((((((((((((.(((...))))))))..)))))))))).....)))))..))))).((((((....)))))).))).)).......)))))
).))))..))))))..))..))).)))))))...)))).))))))..)))))))).)))....


SIMILARITIES
miRBase ptc-MIR166a: 6.0E-11

PMRD ptc-miR166a: 6.0E-11

microPC miR166: 4.0E-9		UniProt no hits

RFAM 6mir-166: 2.0E-8		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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