ABOUT THIS RECORDspecies: Barnadesia spinosa
miRNA family: MIR171
source: miRNEST
Taxonomy by NCBI:
Barnadesia spinosa Barnadesia Barnadesioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATATC miRNA* TATTGGCCTGGTTCACTCAGA mismatches: 2 bulges: 0 |
pre-miRNA
TCATGGTTTCTTGACATGAAAGTGTGGCTATGATATTGGCCTGGTTCACTCAGACAAAATCATCTAGTTTTTTTATTTGATTGAGCCGTGCCAATATCTT
AGTTCTCTTTCATTTTCATTTTTATTTA
dot-bracket secondary structure
...........(((.(((((((...(((((.(((((((((.(((((((.(((((.((((...........)))).))))).))))))).))))))))).)
))))..)))))))..)))..........
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCATGGTTTCTTGACATGAAAGTGTGGCTATGATATTGGCCTGGTTCACTCAGACAAAATCATCTAGTTTTTTTATTTGATTGAGCCGTGCCAATATCTT
AGTTCTCTTTCATTTTCATTTTTATTTA
dot-bracket secondary structure
...........(((.(((((((...(((((.(((((((((.(((((((.(((((.((((...........)))).))))).))))))).))))))))).)
))))..)))))))..)))..........
SIMILARITIES| miRBase hvu-MIR171: 0.00000000003 PMRD zma-miR171e: 0.000000006 microPC miR171: 0.0000004 | UniProt no hits RFAM MIR171_1: 0.000000002 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
