ABOUT THIS RECORDspecies: Barnadesia spinosa
miRNA family: MIR171
source: miRNEST
Taxonomy by NCBI:
Barnadesia spinosa Barnadesia Barnadesioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATATC miRNA* TATTGGCCTGGTTCACTCAGA mismatches: 2 bulges: 0 |
pre-miRNA
ATCATGGTTTCTTGACATGAAAGTGTGGCTATGATATTGGCCTGGTTCACTCAGACAAAATCATCTAGTTTTTTTATTTGATTGAGCCGTGCCAATATCTT
AGTTCTCTTTCATTTTCATTTTTATTTA
dot-bracket secondary structure
)...........(((.(((((((...(((((.(((((((((.(((((((.(((((.((((...........)))).))))).))))))).))))))))).)
))))..)))))))..)))..........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
ATCATGGTTTCTTGACATGAAAGTGTGGCTATGATATTGGCCTGGTTCACTCAGACAAAATCATCTAGTTTTTTTATTTGATTGAGCCGTGCCAATATCTT
AGTTCTCTTTCATTTTCATTTTTATTTA
dot-bracket secondary structure
)...........(((.(((((((...(((((.(((((((((.(((((((.(((((.((((...........)))).))))).))))))).))))))))).)
))))..)))))))..)))..........
SIMILARITIES| miRBase hvu-MIR171: 3.0E-11 PMRD zma-miR171e: 6.0E-9 microPC miR171: 4.0E-7 | UniProt no hits RFAM 1MIR171_1: 2.0E-9 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
