ABOUT THIS RECORDspecies: Botryococcus braunii
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Botryococcus braunii Botryococcus Botryococcaceae Trebouxiophyceae incertae sedis Trebouxiophyceae Chlorophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATCATCATCATCATCATAT miRNA* ACGGTGAGAGATGATGTGAGG mismatches: 2 bulges: 2 |
pre-miRNA
AAATGGATTGATACGGTGAGAGATGATGTGAGGGTTCTTTCGGATCTGAACAATGAGAGAGGGACCTTTATAGCATGGCAAACACTGGCTCAGGATAGAG
GACAGTGGAGGGATCTTATTCACAGTTTGGTCGATACACACACCTGATCTTCGGATTGGAAACGTGGTCATCATCATCATCATCATATACCCTTTGT
dot-bracket secondary structure
(((.((....(((.(((((..((((((((((..((....(((...((((((..((((.((((..((((....((...))...(((((.(((......)))
..)))))))))..)))).))))..)))))).))).)).(((..((((((....))))))....))).))).))))))).))))).))).)).)))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AAATGGATTGATACGGTGAGAGATGATGTGAGGGTTCTTTCGGATCTGAACAATGAGAGAGGGACCTTTATAGCATGGCAAACACTGGCTCAGGATAGAG
GACAGTGGAGGGATCTTATTCACAGTTTGGTCGATACACACACCTGATCTTCGGATTGGAAACGTGGTCATCATCATCATCATCATATACCCTTTGT
dot-bracket secondary structure
(((.((....(((.(((((..((((((((((..((....(((...((((((..((((.((((..((((....((...))...(((((.(((......)))
..)))))))))..)))).))))..)))))).))).)).(((..((((((....))))))....))).))).))))))).))))).))).)).)))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
