miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST000238
species: Brassica napus
miRNA family: MIR413
source: miRNEST

Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTAGTTTCTCTTGTTCTGTCG

miRNA*
 GAGAACGAGGGAGTGAAGTA

mismatches: 4
bulges: 1
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pre-miRNA
 AGGGAGAGCAAGGAGAACGAGGGAGTGAAGTATGTGAGGATGGAGAGGAGGATGGGGAAGTTCATGAGGAAGTTTCAGTTGCCTGAGAATGCGGATTTGG
AGAAGATATCTGCTTCTTGTAATGACGGTGTGTTGAAAGTGACTGTTGGGAAGCTTCCTCCTCCTGAGCCTAAGAAACCGAAGACTATTCAGGTCCAAGT
CGCTTGAGCTGCTAGTTTCTCTTGTTCTGTCGTGTGTTTGT

dot-bracket secondary structure
.....(((((.((((((((((((((...((((..(((((((((((((.((..(((....(((((.(((((((((((.(((((..(((((.((((((((..
....)).))))))))))))))))((((((............))))))..)))))))))))....)))))........)))....)).)))...))))..)
).))))...))))...)))))))))))).))...)))))..


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|O81822|HS177_ARATH: 2e-20

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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